I noticed that the fuel tank appears to be sitting beside the bike and the chrome instrument panel is still attached. I'm guessing the wiring is holding it there. You really should remove the chrome instrument panel and unplug the harness to prevent putting too much strain on it under the dash.
I'm really concerned about the number of cracks in the air box. If any air is getting in through those cracks, it is going right into the engine unfiltered. You might want to seal the cracks up with silicon.
Since you stated that you had spark in both cylinders the problem is more than likely fuel related (not enough fuel, too much air). Just follow Ed's comments.
