Hey Ryan, for such nice bikes they sure CAN be a pain in the butt, eh! It turns out just a few weeks ago there was a fairly long thread going here about the same exact thing.
You can find that thread here. Like many here, I spent some time and money getting my bike just right and now, it really is JUST RIGHT!! So it can be done... variables like the type of seat, bars, risers, foot pegs and position, etc can play a part in making our bikes more comfortable. I'm sure you'll get 'er 'dialed in' just right for you.
