Thought I'd post an update. mag10 thanks for your thoughts on the r/r. I will do the mod soon and see what happens.

After checking for spark with both CDI's, I was getting no spark on one cyl with old CDI and spark on both with procom, so I bought the procom at the Dealership where I had taken it to be fixed. She starts w/o choke and will run now when I try pulling the choke out, but not smooth. She idles much better with no choke, but will not take throttle unless she warms up a bit. Once warmed up she ran quite well going home from the dealership. I rode to work this AM and she ran worse than before I took to the shop! A lot of misfires and hesitation on steady (especially low) RPM. Twist the throttle and she hesitates at first, then responds well. Seems like a lean mixture issue in the pilot circuit, but I'm wondering if the r/r is in fact the issue??