Here's my suggestion. When does your bike come home, Cory? I'd say you post a few pics of the pipes (including inside so we can see baffles) and some shots of the air intake set up. Which sounds like is heading back to stock...God help us

You're basic set up right now is:
K&N pod filters
Carb jets unknown
Air Fuel mixture screw unknown
Some sort of sceptre, bub, trident, etc exhaust
Sea level elevation
Shims and needles unknown
I'd say it's most important to pull the carbs as suggested and find the size of those jets. If you have shims and what kind of needles. You'd be surprised how many of these guys can recognize a part or specific brand by a picture. We love pics

Then we can fill in some of those unknowns and get better suggestions to you. And while your at it might as well move those vent tubes around like Brian said...can't hurt!