My bike is a 2006 America 790. I noticed that I did not include the year and motor in my first post. Thanks for all of the suggestions. I now feel like I at least have a starting point. I sent an email to Bub, who replied that they would not make jetting recommendations. They are obviously scared of the liability involved, but it is frustrating.
British Customs recommended:
In CA at sea level most have been running a 13 or 140 main with 42 pilots with about 2 1/2 out on idle mix screw. With your elevation you may just need to tweak the idle screw a tad more to compensate for elevation. We do not use shims which is why we go bigger on the mains but have heard of my dealers in elevation areas such as CO that do for elevation.