Well after having Chevy605 drill out my pipes, swapping the air filter for a UNI, and pulling the snorkel out, I had the bike dyno tuned by a local shop, D&D Cycle in San Marcos CA, and came up with 61hp/49flbs. Used 42/125 jets, 2 shims per needle, and we were back up and running. I also had them swap the front springs for the Progressive springs.
I can definitely tell the bike is running and riding better. So far I am very happy with the results.
If requested I can upload the result sheets.
Thanks to Bella Corse, Chevy605, Newbonneville.com, and those who recommended the small things that make a difference.