just a suggestion here. There are many flavors of the TOR pipes. some have baffles, some have none. Some have some dampening material behind a screen, some don't.
Perhaps you have a set that has some of the baffles or other restriction. The TOR's on Pats jetting calculator are for those that are open, I believe.
Look in your pipes with a flashlight. If you cannot see all the way to the header turn, I'd look at using Pat's calculator with the stock pipe and 2 baffles out.
Also, post the AF from the dyno. That will tell a lot. I'm running drag pipes and 45/150/TBS w 2 shims and I'm lean in the middle. From what I saw on the first AF post, you are WAAAAYYYY rich.