Ok, a friend of mine at work has suggested the only plausible answer to my problem, and as strange as it sounds, it's the only solution that fits. It's basically a matter of fluid dynamics. As an object travels through the air, positive air pressure builds in front of the object, and negative air pressure develops behind it. NASCAR calls this drafting, airplanes call it lift/drag, and my bike calls it vacuum choking. Essentially as I ride into a strong headwind, the negative pressure forming behind the motor is creating an air "void", causing it to basically choke itself rich, thus the "flat" throttle response. This may sound very obscure, but it explains why this problem is not constant, and town driving is unaffected, because of the relative slower speeds. This very effect is why ram air induction faces INTO the direction of travel instead of away from it, the vacuum formed would literally suck the air OUT of the carb.
So now the problem is in the fixing. I'm imagining some sort of air dam/guide to force more air toward the filter pods. It will have to be hidden under the seat, possibly attached to the downtube, I'll just have to get creative, but at least I have a direction now. Thank you all for your suggestions, maybe if someone else develops this problem they can use this info too.
