Finally got a chance to see a new blue & white Scrambler (and two new 675s) last weekend at Trebour Motorcycles in NJ. Great looking bike - congrats!
I think you haven't gotten any responses to your post since there is a ton of info posted and opinions on this site about what you can do to tune you Bonneville engine. Probably no one knows where to even begin in making a recommendation to you.
That said, you might want to start where I did - and where I bet everyone else does to... check out Pat's web site! It's got great carb info and it's a nice long detailed read about drinking, er, "tuning" theory. Click on
www.Dinqua.comOtherwise, seems like your already doing all the right things. Good Luck!